OpenFold carefully reproduces (almost) all of the features of the original open source inference code (v2.0.1). The sole exception is model ensembling, which fared poorly in DeepMind's own ablation ...
Abstract: The progressive edge-growth (PEG) algorithm constructs an edge in each stage to maximize the variable node (VN) of interest's local girth in real time. Thus, this VN's local girths, after ...
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